• About
    • Welcome to Scanbox!
    • Scanbox system integration
    • A Quick Look at Scanbox’s GUI
  • FAQs
    • How to update Scanbox?
    • Knobby 2.0
    • basic processing pipeline
  • N: Advanced Features
    • A Plug-in Server
    • Real-time signal extraction, visualization and processing in scanbox 2.0
    • Intrinsic & epi-fluorescence imaging using the port camera
    • Sbxsegmenttool: A simple GUI for off-line segmentation
    • Scanbox does 2p-SLM stimulation! (And the mystery of the disappearing cell)
    • Mesoscope features: real-time panoramas, ROI selection, zoom/pan, and dynamic ROIs
  • Neurolabware
Start typing and press
Enter to search
  • Twitter
  • Instagram
  • NLW Vimeo
  • Dario Vimeo
  • Dario Twitter
Follow
Skip to content

Scanbox

open search form close search form
  • About
    • Welcome to Scanbox!
    • Scanbox system integration
    • A Quick Look at Scanbox’s GUI
  • FAQs
    • How to update Scanbox?
    • Knobby 2.0
    • basic processing pipeline
  • N: Advanced Features
    • A Plug-in Server
    • Real-time signal extraction, visualization and processing in scanbox 2.0
    • Intrinsic & epi-fluorescence imaging using the port camera
    • Sbxsegmenttool: A simple GUI for off-line segmentation
    • Scanbox does 2p-SLM stimulation! (And the mystery of the disappearing cell)
    • Mesoscope features: real-time panoramas, ROI selection, zoom/pan, and dynamic ROIs
  • Neurolabware
By: darioringach August 3, 2014January 8, 2018
Alignment, Uncategorized

Non-rigid deformation for calcium imaging frame alignment

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Facebook (Opens in new window) Facebook
Like Loading...
Alignment, Uncategorized
darioringach's avatar
Posted by:darioringach

Post navigation

basic processing pipeline
Reading raw data with sbxread()
1 reply to Non-rigid deformation for calcium imaging frame alignment
  1. Pingback: Non-rigid image alignment in twenty lines of Matlab | Scanbox

Leave a comment Cancel reply

The Scanbox Manual

  • A: Quick Start
  • B: Scanning Parameters
    • Scanning Calibration
  • D: Motion Control and Knobby
    • Motion Calibration
  • E: Camera Port
  • F: PMTs
  • G: Laser System Control
  • H: Laser Power and Pockels Cell
    • Pockels Calibration and Linearization
  • I: Behavior Monitoring
  • J: Z-Scanning
    • Z-Scanning Calibration and Linearization
  • K: Z-Stacks
  • L: External Synchronization and Control
  • M: Analysis
    • Alignment
    • Behavior Data
    • Segmentation
    • Volumetric Data
  • mesoscope
  • N: Advanced Features
  • O: Optimizations
  • P: SLM
  • Uncategorized

Recent Comments

darioringach's avatardarioringach on New features for patterned pho…
darioringach's avatardarioringach on New features for patterned pho…
SandyK's avatarfearless9a471f18eb on New features for patterned pho…
Sandy Kuhlman's avatarSandy Kuhlman on New features for patterned pho…
darioringach's avatardarioringach on Scanbox Searches for a Po…

Archives

  • February 2025
  • August 2024
  • October 2022
  • September 2022
  • August 2022
  • August 2021
  • April 2021
  • March 2021
  • February 2021
  • December 2020
  • October 2020
  • September 2020
  • February 2020
  • January 2020
  • December 2019
  • October 2019
  • August 2019
  • July 2019
  • March 2019
  • August 2018
  • May 2018
  • March 2018
  • December 2017
  • November 2017
  • October 2017
  • September 2017
  • July 2017
  • May 2017
  • April 2017
  • February 2017
  • January 2017
  • December 2016
  • November 2016
  • October 2016
  • September 2016
  • August 2016
  • July 2016
  • June 2016
  • May 2016
  • April 2016
  • March 2016
  • February 2016
  • January 2016
  • December 2015
  • November 2015
  • October 2015
  • September 2015
  • July 2015
  • June 2015
  • May 2015
  • February 2015
  • January 2015
  • December 2014
  • November 2014
  • October 2014
  • September 2014
  • August 2014
  • July 2014
  • June 2014
  • May 2014
  • April 2014
  • March 2014
Blog at WordPress.com.
  • Comment
  • Subscribe Subscribed
    • Scanbox
      • Join 32 other subscribers
    • Already have a WordPress.com account? Log in now.
    • Scanbox
    • Subscribe Subscribed
    • Sign up
    • Log in
    • Copy shortlink
    • Report this content
    • View post in Reader
    • Manage subscriptions
    • Collapse this bar
%d