Processing Volumetric Data

After collecting volumetric data with the Optotune you can now process your data as follows. First, use sbxsplit() to generate separate data files for each “slice” of the optotune. For example, if I have a data file gn7_008_001.sbx collected some data with an optotune waveform having a period of 5 the command will generate a…

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A montage display for real-time display of volumetric data

  By default, Scanbox displays the incoming image stream on its main window. Thus, during¬†volumetric scanning, one sees the incoming images as depth is changing over time. ¬†If one is imaging only a handful of optical planes, it is difficult to see what is really going on. A different way to visualize the data in…

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