We have made some recent improvements to the mesoscope GUI (thanks to Zaneta Navratilova and Dhruba Banerjee from Bruce McNaughton Lab at UCI for the feedback). The new interface allows users to: Quickly create a wide-field panorama Define ROIs and their locations Adjust the depth (ETL setting) and laser power for each ROI. Save/Load previously…
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Online cell segmentation in Scanbox
There is one hidden feature of Scanbox that has been around for some time, but I have not yet described. This feature allows for computer-assisted segmentation during an experiment. As you must already know, one way in which region of interests (ROIs) can be defined is manually. This process can be initiated by clicking on the Add button…
Read MoreReal-time signal extraction, visualization and processing in scanbox 2.0
Here is a sneak preview of the new features to be released with Scanbox 2.0. Some of the salient additions include: Automatic stabilization: The system can automatically correct for rigid (x,y) translation in real time. Selection of regions of interest (ROIs): Allows for the selection of regions of interest that need to be tracked in real-time. After their definition,…
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Scanbox 